cellmaps_imagedownloader
Contents:
Installation
Usage
Inputs
Outputs
Reference
Developer Topics
Credits
History
cellmaps_imagedownloader
Index
Index
C
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D
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F
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G
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I
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L
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M
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P
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Q
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R
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S
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U
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C
cellmaps_imagedownloader
module
cellmaps_imagedownloader.cellmaps_imagedownloadercmd
module
cellmaps_imagedownloader.exceptions
module
cellmaps_imagedownloader.gene
module
cellmaps_imagedownloader.proteinatlas
module
cellmaps_imagedownloader.runner
module
CellmapsImageDownloader (class in cellmaps_imagedownloader.runner)
CellMapsImageDownloaderError
CM4AICopyDownloader (class in cellmaps_imagedownloader.runner)
CM4AIImageCopyTupleGenerator (class in cellmaps_imagedownloader.proteinatlas)
CM4AITableConverter (class in cellmaps_imagedownloader.gene)
D
DEFAULT_PROTEINATLAS_URL (cellmaps_imagedownloader.proteinatlas.ProteinAtlasReader attribute)
download_file() (in module cellmaps_imagedownloader.runner)
download_file_skip_existing() (in module cellmaps_imagedownloader.runner)
download_images() (cellmaps_imagedownloader.runner.CM4AICopyDownloader method)
(cellmaps_imagedownloader.runner.FakeImageDownloader method)
(cellmaps_imagedownloader.runner.ImageDownloader method)
(cellmaps_imagedownloader.runner.MultiProcessImageDownloader method)
download_proteinalas_file() (in module cellmaps_imagedownloader.proteinatlas)
F
FakeImageDownloader (class in cellmaps_imagedownloader.runner)
filter_samples_by_sample_urlmap() (cellmaps_imagedownloader.gene.ImageGeneNodeAttributeGenerator method)
G
GeneNodeAttributeGenerator (class in cellmaps_imagedownloader.gene)
GeneQuery (class in cellmaps_imagedownloader.gene)
generate_readme() (cellmaps_imagedownloader.runner.CellmapsImageDownloader method)
get_dicts_of_gene_to_antibody_filename() (cellmaps_imagedownloader.gene.ImageGeneNodeAttributeGenerator method)
get_example_provenance() (cellmaps_imagedownloader.runner.CellmapsImageDownloader static method)
get_gene_node_attributes() (cellmaps_imagedownloader.gene.GeneNodeAttributeGenerator method)
(cellmaps_imagedownloader.gene.ImageGeneNodeAttributeGenerator method)
get_image_gene_node_attributes_file() (cellmaps_imagedownloader.runner.CellmapsImageDownloader method)
get_image_gene_node_errors_file() (cellmaps_imagedownloader.runner.CellmapsImageDownloader method)
get_image_id_for_sample() (cellmaps_imagedownloader.gene.ImageGeneNodeAttributeGenerator static method)
get_next_image_id_and_url() (cellmaps_imagedownloader.proteinatlas.ProteinAtlasImageUrlReader method)
get_next_image_url() (cellmaps_imagedownloader.proteinatlas.CM4AIImageCopyTupleGenerator method)
(cellmaps_imagedownloader.proteinatlas.ImageDownloadTupleGenerator method)
(cellmaps_imagedownloader.proteinatlas.LinkPrefixImageDownloadTupleGenerator method)
get_sample_list_from_hpa() (cellmaps_imagedownloader.proteinatlas.ProteinAtlasProcessor method)
get_sample_urlmap() (cellmaps_imagedownloader.proteinatlas.CM4AIImageCopyTupleGenerator method)
(cellmaps_imagedownloader.proteinatlas.ImageDownloadTupleGenerator method)
(cellmaps_imagedownloader.proteinatlas.LinkPrefixImageDownloadTupleGenerator method)
get_samples_and_unique_lists() (cellmaps_imagedownloader.gene.CM4AITableConverter method)
get_samples_from_csvfile() (cellmaps_imagedownloader.gene.ImageGeneNodeAttributeGenerator static method)
get_samples_list() (cellmaps_imagedownloader.gene.ImageGeneNodeAttributeGenerator method)
get_samples_list_image_ids() (cellmaps_imagedownloader.gene.ImageGeneNodeAttributeGenerator method)
get_symbols_for_genes() (cellmaps_imagedownloader.gene.GeneQuery method)
get_unique_list() (cellmaps_imagedownloader.gene.ImageGeneNodeAttributeGenerator method)
get_unique_list_from_csvfile() (cellmaps_imagedownloader.gene.ImageGeneNodeAttributeGenerator static method)
I
ImageDownloader (class in cellmaps_imagedownloader.runner)
ImageDownloadTupleGenerator (class in cellmaps_imagedownloader.proteinatlas)
ImageGeneNodeAttributeGenerator (class in cellmaps_imagedownloader.gene)
IMG_SUFFIX (cellmaps_imagedownloader.runner.CellmapsImageDownloader attribute)
L
LINKPREFIX_HEADER (cellmaps_imagedownloader.gene.ImageGeneNodeAttributeGenerator attribute)
LinkPrefixImageDownloadTupleGenerator (class in cellmaps_imagedownloader.proteinatlas)
M
main() (in module cellmaps_imagedownloader.cellmaps_imagedownloadercmd)
module
cellmaps_imagedownloader
cellmaps_imagedownloader.cellmaps_imagedownloadercmd
cellmaps_imagedownloader.exceptions
cellmaps_imagedownloader.gene
cellmaps_imagedownloader.proteinatlas
cellmaps_imagedownloader.runner
MultiProcessImageDownloader (class in cellmaps_imagedownloader.runner)
P
POOL_SIZE (cellmaps_imagedownloader.runner.MultiProcessImageDownloader attribute)
ProteinAtlasImageUrlReader (class in cellmaps_imagedownloader.proteinatlas)
ProteinAtlasProcessor (class in cellmaps_imagedownloader.proteinatlas)
ProteinAtlasReader (class in cellmaps_imagedownloader.proteinatlas)
Q
querymany() (cellmaps_imagedownloader.gene.GeneQuery method)
R
readline() (cellmaps_imagedownloader.proteinatlas.ProteinAtlasReader method)
run() (cellmaps_imagedownloader.runner.CellmapsImageDownloader method)
S
SAMPLES_FILEKEY (cellmaps_imagedownloader.runner.CellmapsImageDownloader attribute)
SAMPLES_HEADER_COLS (cellmaps_imagedownloader.gene.ImageGeneNodeAttributeGenerator attribute)
U
UNIQUE_FILEKEY (cellmaps_imagedownloader.runner.CellmapsImageDownloader attribute)
UNIQUE_HEADER_COLS (cellmaps_imagedownloader.gene.ImageGeneNodeAttributeGenerator attribute)
W
write_samples_to_csvfile() (cellmaps_imagedownloader.gene.ImageGeneNodeAttributeGenerator method)
write_unique_list_to_csvfile() (cellmaps_imagedownloader.gene.ImageGeneNodeAttributeGenerator method)